Patch 2.01

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Fresh install meaning? Are we supposed to delete and reinstall the matrix game set? If we are at the last patch of 2.0, why can't we just add 2.01 to that and keep going instead of taking two steps back to take one step forward?

Because from 2.00 to 2.01, stuff was moved, renamed, or removed entirely. If you update 2.00 -> 2.01 (rather than the recommended 1.00 -> 2.01), you will have interim 2.00 cruft lying around -- cruft that might interfere with the game's proper operation.

In future, Matrix/Slitherine might "remaster" the installation, so that (by then) 2.10 (or whatever) will be the new base install. We didn't have time to implement that for 2.01. Later.

This 'cruft' you are speaking of. Will this also be the case when I copy and paste my EF?WF files from 2.0 into 2.01? I have tons of non-stock gamefiles in 2.0. Jason said I could do this but he did not mention about files that could cause problems wth the proper operation of the game.